PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634192.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 313aa    MW: 34407.5 Da    PI: 6.0292
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.73.7e-2944137185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                     rWt+qe+l+Li+++r  e+r+rrg+         +++++W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s +++ +++
  XP_013634192.1  44 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMETKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQVKEETESYWVMRNDV 137
                     8**********************97778888888******************************************************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.45844110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.9E-544109IPR009057Homeodomain-like
PfamPF138373.6E-1344134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALEQQLGLA VTAVDGDGNG GGGENSAPSN EGGDDSVKTA RLPRWTRQEI LVLIQGKRVA  60
ENRVRRGRAA GMALGSGQME TKWASVSSYC RRHGVNRGPV QCRKRWSNLA GDYKKIKEWE  120
SQVKEETESY WVMRNDVRRE RKLPGFFDKE VYDVVDGGVV PPALALGLAP ASAAAEGVLS  180
ELERREPAPN KLLQDVFMDK EKQAACGADD QGRVKEKDAE AANPEAGSTS QEARKRKRTS  240
ASEDEEKEEE ATKSMDNQLI QILERNGQLL AAQLEVQNTN LKLDREQRKD HGDNLVAVLS  300
KLADAVAKIA DKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892920.0AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634192.10.0PREDICTED: uncharacterized protein LOC106339873
SwissprotQ8VZ201e-167ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A0D3C3Y40.0A0A0D3C3Y4_BRAOL; Uncharacterized protein
STRINGBra021860.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-137Trihelix family protein